Publications

Conference Publications

Yang Li(1), Haidong Yi(1), Christopher M Bender, Siyuan Shan, Junier B Oliva; Exchangeable neural ode for set modeling, NueralIPS, 2020. [pdf] ((1) represents co-first author.)

Journal Publications

Le Huang, Bowen Yang, Haidong Yi, Amina Asif, Jiawei Wang, Trevor Lithgow, Han Zhang, Fayyaz ul Amir Afsar Minhas, Yanbin Yin, AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses, Nucleic Acids Research, , gkaa857, [link][website]

Haidong Yi, Le Huang, Bowen Yang, Javi Gomez, Han Zhang, Yanbin Yin, AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses, Nucleic Acids Research, Volume 48, Issue W1, 02 July 2020, Pages W358–W365, [link][website]

Catherine Ausland, Jinfang Zheng, Haidong Yi, Bowen Yang, Tang Li, Xuehuan Feng, Bo Zheng, Yanbin Yin; dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates, Nucleic Acids Research, [link][website]

Xiao Wang, Haidong Yi, Jia Wang, Zhandong Liu, Yanbin Yin, Han Zhang, GDASC: a GPU parallel-based web server for detecting hidden batch factors, Bioinformatics, Volume 36, Issue 14, 15 August 2020, Pages 4211–4213, [link]

Haidong Yi, Ayush T. Raman, Han Zhang, Genevera I. Allen, Zhandong Liu, Detecting hidden batch factors through data-adaptive adjustment for biological effects, Bioinformatics, Volume 34, Issue 7, 1 April 2018, Pages 1141–1147. [pdf] [code]

Le Huang, Han Zhang, Peizhi Wu, Sarah Entwistle, Xueqiong Li, Tanner Yohe, Haidong Yi, Zhenglu Yang, Yanbin Yin; dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation, Nucleic Acids Research, Volume 46, Issue D1, 4 January 2018, Pages D516–D521. [pdf][website]

Wei Liu, Shunjian Ma, Mingwei Sun, Haidong Yi, Zenghui Wang, Zengqiang Chen; Sequential quadratic programming-based fast path planning algorithm subject to no-fly zone constraints, Engineering Optimization, Volume 48, Issue 8, 2016, pp.1401-1418. [pdf]